{ "_id": "6a1fd14eb401979e7343544c", "Package": "kairos", "Title": "Analysis of Chronological Patterns from Archaeological Count\nData", "Version": "2.4.0", "Authors@R": "c(\nperson(\"Nicolas\", \"Frerebeau\", , \"nicolas.frerebeau@u-bordeaux-montaigne.fr\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0001-5759-4944\")),\nperson(\"Brice\", \"Lebrun\", role = \"art\",\ncomment = c(ORCID = \"0000-0001-7503-8685\", \"Logo designer\")),\nperson(\"Ben\", \"Marwick\", , \"bmarwick@uw.edu\", role = \"ctb\",\ncomment = c(ORCID = \"0000-0001-7879-4531\")),\nperson(\"Anne\", \"Philippe\", , \"anne.philippe@univ-nantes.fr\", role = \"ctb\",\ncomment = c(ORCID = \"0000-0002-5331-5087\")),\nperson(\"Université Bordeaux Montaigne\", role = \"fnd\",\ncomment = c(ROR = \"03pbgwk21\")),\nperson(\"CNRS\", role = \"fnd\",\ncomment = c(ROR = \"02feahw73\"))\n)", "Maintainer": "Nicolas Frerebeau\n", "Description": "A toolkit for absolute and relative dating and analysis of\nchronological patterns. This package includes functions for\nchronological modeling and dating of archaeological assemblages\nfrom count data. It provides methods for matrix seriation. It\nalso allows to compute time point estimates and density\nestimates of the occupation and duration of an archaeological\nsite.", "License": "GPL (>= 3)", "URL": "https://codeberg.org/tesselle/kairos,\nhttps://packages.tesselle.org/kairos/,\nhttps://tesselle.r-universe.dev/kairos", "BugReports": "https://codeberg.org/tesselle/kairos/issues", "VignetteBuilder": "knitr", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "Collate": "'AllClasses.R' 'AllGenerics.R' 'aoristic.R' 'apportion.R'\n'bootstrap.R' 'coerce.R' 'event_date.R' 'event_model.R'\n'event_plot.R' 'fit.R' 'jackknife.R' 'kairos-deprecated.R'\n'kairos-internal.R' 'kairos-package.R' 'mcd.R' 'mutators.R'\n'plot_time.R' 'seriation_assess.R' 'seriation_average.R'\n'seriation_coerce.R' 'seriation_permute.R' 'seriation_rank.R'\n'seriation_refine.R' 'show.R' 'subset.R' 'validate.R' 'zzz.R'", "Config/roxygen2/version": "8.0.0", "Repository": "https://tesselle.r-universe.dev", "Date/Publication": "2026-05-04 12:05:20 UTC", "RemoteUrl": "https://codeberg.org/tesselle/kairos", "RemoteRef": "HEAD", "RemoteSha": "1de6d31394d4f01dae9cc493ef49fc3ed3b15f7b", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-03 06:56:51 UTC", "User": "root" }, "Author": "Nicolas Frerebeau [aut, cre] (ORCID:\n),\nBrice Lebrun [art] (ORCID: ,\nLogo designer),\nBen Marwick [ctb] (ORCID: ),\nAnne Philippe [ctb] (ORCID: ),\nUniversité Bordeaux Montaigne [fnd] (ROR: ),\nCNRS [fnd] (ROR: )", "MD5sum": "a9493fba51240c03e70480e028da0871", "_user": "tesselle", "_type": "src", "_file": "kairos_2.4.0.tar.gz", "_fileid": "6037be1c64688cefd19f0df1e0bbcf7fbd30e48f4e0ea7bd040c9a776e92919b", "_filesize": 2142331, "_sha256": "6037be1c64688cefd19f0df1e0bbcf7fbd30e48f4e0ea7bd040c9a776e92919b", "_created": "2026-06-03T06:56:51.000Z", "_published": "2026-06-03T07:01:34.281Z", "_distro": "noble", "_jobs": [ { "job": 79238972646, "time": 137, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7377776918" }, { "job": 79238972717, "time": 140, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7377777494" }, { "job": 79238972705, "time": 233, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7377794846" }, { "job": 79238972922, "time": 164, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7377778515" }, { "job": 79238554218, "time": 175, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7377735647" }, { "job": 79238972665, "time": 102, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7377766314" }, { "job": 79238972678, "time": 113, "config": "windows-devel", "r": "4.7.0", "check": "ERROR", "artifact": "7377769730" }, { "job": 79238972807, "time": 96, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7377764640" }, { "job": 79238972695, "time": 104, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7377766819" } ], "_buildurl": "https://github.com/r-universe/tesselle/actions/runs/26868749848", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://codeberg.org/tesselle/kairos", "_commit": { "id": "1de6d31394d4f01dae9cc493ef49fc3ed3b15f7b", "author": "nfrerebeau ", "committer": "nfrerebeau ", "message": "Small fixes\n", "time": 1777896320 }, "_maintainer": { "name": "Nicolas Frerebeau", "email": "nicolas.frerebeau@u-bordeaux-montaigne.fr", "login": "nfrerebeau", "mastodon": "@nfrerebeau@archaeo.social", "orcid": "0000-0001-5759-4944", "description": "Archaeologist, research engineer at @crp2a", "uuid": 33983845 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5", "role": "Depends" }, { "package": "aion", "version": ">= 1.7.0", "role": "Depends" }, { "package": "dimensio", "version": ">= 0.14.0", "role": "Depends" }, { "package": "arkhe", "version": ">= 1.11.0", "role": "Imports" }, { "package": "extraDistr", "role": "Imports" }, { "package": "grDevices", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "folio", "version": ">= 1.5.0", "role": "Suggests" }, { "package": "fontquiver", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "markdown", "role": "Suggests" }, { "package": "rsvg", "role": "Suggests" }, { "package": "svglite", "role": "Suggests" }, { "package": "tabula", "version": ">= 3.3.0", "role": "Suggests" }, { "package": "tinysnapshot", "version": ">= 0.2.0", "role": "Suggests" }, { "package": "tinytest", "role": "Suggests" } ], "_owner": "codeberg-tesselle", "_selfowned": true, "_usedby": 2, "_updates": [ { "week": "2025-23", "n": 1 }, { "week": "2025-36", "n": 1 }, { "week": "2025-51", "n": 3 }, { "week": "2026-06", "n": 3 }, { "week": "2026-19", "n": 2 } ], "_tags": [], "_topics": [ "chronology", "matrix-seriation", "archaeology", "archaeological-science" ], "_userbio": { "uuid": 78033555, "type": "organization", "name": "tesselle", "description": "A collection of R packages for archaeological research and teaching" }, "_downloads": { "count": 580, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/kairos" }, "_devurl": "https://codeberg.org/tesselle/kairos", "_pkgdown": "https://packages.tesselle.org/kairos/", "_searchresults": 11, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/kairos.html", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://codeberg.org/tesselle/kairos", "_realowner": "nfrerebeau", "_cranurl": true, "_releases": [ { "version": "1.0.0", "date": "2021-11-08" }, { "version": "1.0.1", "date": "2022-03-11" }, { "version": "1.1.0", "date": "2022-06-18" }, { "version": "1.2.0", "date": "2022-11-09" }, { "version": "2.0.0", "date": "2023-08-30" }, { "version": "2.0.1", "date": "2023-09-05" }, { "version": "2.0.2", "date": "2023-11-27" }, { "version": "2.1.0", "date": "2024-02-26" }, { "version": "2.1.1", "date": "2024-07-26" }, { "version": "2.2.0", "date": "2024-12-10" }, { "version": "2.2.1", "date": "2025-04-03" }, { "version": "2.3.0", "date": "2025-05-19" } ], "_exports": [ "aoristic", "apportion", "as_seriation", "as.data.frame", "assess", "bootstrap", "coef", "density_accumulation", "density_event", "end", "event", "fit", "fitted", "get_order", "hist", "image", "jackknife", "mcd", "order_columns", "order_rows", "permute", "plot", "plot_time", "predict_accumulation", "predict_event", "refine", "residuals", "roc", "seriate_average", "seriate_rank", "seriate_refine", "sigma", "simulate", "span", "start", "terms", "time", "weights" ], "_help": [ { "page": "aoristic", "title": "Aoristic Analysis", "concept": [ "aoristic analysis" ], "topics": [ "aoristic", "aoristic,ANY,missing-method", "aoristic,numeric,numeric-method", "aoristic-method" ] }, { "page": "apportion", "title": "Chronological Apportioning", "concept": [ "chronological analysis", "chronological apportioning methods" ], "topics": [ "apportion", "apportion,data.frame-method", "apportion,matrix-method", "apportion-method" ] }, { "page": "as_seriation", "title": "Coerce an R Object to a Seriation Order", "concept": [ "seriation methods" ], "topics": [ "as_seriation", "as_seriation,CA-method", "as_seriation-method" ] }, { "page": "as.data.frame", "title": "Coerce to a Data Frame", "concept": [ "mutators" ], "topics": [ "as.data.frame", "as.data.frame,AoristicSum-method", "as.data.frame,CountApportion-method", "as.data.frame,IncrementTest-method", "as.data.frame,MeanDate-method" ] }, { "page": "assess", "title": "Statistical Significance of Seriation Solutions", "concept": [ "seriation methods" ], "topics": [ "assess", "assess,AveragePermutationOrder-method", "assess-method" ] }, { "page": "bootstrap.EventDate", "title": "Bootstrap Event Dates", "concept": [ "resampling methods" ], "topics": [ "bootstrap,EventDate-method", "bootstrap.EventDate" ] }, { "page": "bootstrap.MeanDate", "title": "Bootstrap Mean Ceramic Dates", "concept": [ "resampling methods" ], "topics": [ "bootstrap,MeanDate-method", "bootstrap.MeanDate" ] }, { "page": "density_event", "title": "Density of Event and Accumulation Dates", "concept": [ "event date tools" ], "topics": [ "density_accumulation", "density_accumulation,EventDate-method", "density_accumulation-method", "density_event", "density_event,EventDate-method", "density_event-method" ] }, { "page": "event", "title": "Event and Accumulation Dates", "concept": [ "dating methods", "event date tools" ], "topics": [ "event", "event,data.frame,numeric-method", "event,matrix,numeric-method", "event-method" ] }, { "page": "fit", "title": "Frequency Increment Test", "concept": [ "chronological analysis" ], "topics": [ "fit", "fit,data.frame,numeric-method", "fit,matrix,numeric-method", "fit-method" ] }, { "page": "jackknife.EventDate", "title": "Jackknife Event Dates", "concept": [ "resampling methods" ], "topics": [ "jackknife,EventDate-method", "jackknife.EventDate" ] }, { "page": "jackknife.MeanDate", "title": "Jackknife Mean Ceramic Dates", "concept": [ "resampling methods" ], "topics": [ "jackknife,MeanDate-method", "jackknife.MeanDate" ] }, { "page": "mcd", "title": "Mean Ceramic Date", "concept": [ "dating methods", "mean ceramic date tools" ], "topics": [ "mcd", "mcd,data.frame,numeric-method", "mcd,matrix,numeric-method", "mcd,numeric,numeric-method", "mcd-method" ] }, { "page": "model_event", "title": "Extract Event Date Model Results", "concept": [ "event date tools" ], "topics": [ "coef,EventDate-method", "fitted,EventDate-method", "model_event", "residuals,EventDate-method", "sigma,EventDate-method", "summary,EventDate,missing-method", "summary,EventDate-method", "terms,EventDate-method" ] }, { "page": "mutators", "title": "Get or Set Parts of an Object", "concept": [ "mutators" ], "topics": [ "get", "mutators", "set", "weights,AoristicSum-method", "weights,CountApportion-method" ] }, { "page": "order", "title": "Permutation Order", "concept": [ "seriation methods" ], "topics": [ "order", "order_columns", "order_columns,PermutationOrder-method", "order_columns-method", "order_rows", "order_rows,PermutationOrder-method", "order_rows-method" ] }, { "page": "permute", "title": "Rearrange a Data Matrix", "concept": [ "seriation methods" ], "topics": [ "permute", "permute,data.frame,PermutationOrder-method", "permute,matrix,PermutationOrder-method", "permute-method" ] }, { "page": "plot_time", "title": "Abundance vs Time Plot", "concept": [ "plotting methods" ], "topics": [ "plot_time", "plot_time,data.frame,numeric-method", "plot_time,matrix,numeric-method", "plot_time-method" ] }, { "page": "plot.AoristicSum", "title": "Plot Aoristic Analysis", "concept": [ "plotting methods" ], "topics": [ "image,AoristicSum-method", "plot,AoristicSum,missing-method", "plot,RateOfChange,missing-method", "plot.AoristicSum" ] }, { "page": "plot.EventDate", "title": "Plot Event and Accumulation Dates", "concept": [ "plotting methods" ], "topics": [ "plot,EventDate,missing-method", "plot.EventDate" ] }, { "page": "plot.IncrementTest", "title": "Detection of Selective Processes", "concept": [ "plotting methods" ], "topics": [ "plot,IncrementTest,missing-method", "plot.IncrementTest" ] }, { "page": "plot.MeanDate", "title": "MCD Plot", "concept": [ "plotting methods" ], "topics": [ "plot,MeanDate,missing-method", "plot,SimulationMeanDate,missing-method", "plot.MeanDate" ] }, { "page": "predict_event", "title": "Predict Event and Accumulation Dates", "concept": [ "event date tools" ], "topics": [ "predict_accumulation", "predict_accumulation,EventDate,matrix-method", "predict_accumulation,EventDate,missing-method", "predict_accumulation-method", "predict_event", "predict_event,EventDate,matrix-method", "predict_event,EventDate,missing-method", "predict_event-method" ] }, { "page": "refine", "title": "Refine CA-based Seriation", "concept": [ "seriation methods" ], "topics": [ "refine", "refine,AveragePermutationOrder-method", "refine,BootstrapCA-method", "refine-method" ] }, { "page": "roc", "title": "Rate of Change", "concept": [ "aoristic analysis" ], "topics": [ "roc", "roc,AoristicSum-method", "roc-method" ] }, { "page": "seriate_average", "title": "Correspondence Analysis-Based Seriation", "concept": [ "seriation methods" ], "topics": [ "seriate_average", "seriate_average,data.frame-method", "seriate_average,matrix-method", "seriate_average-method" ] }, { "page": "seriate_rank", "title": "Reciprocal Ranking Seriation", "concept": [ "seriation methods" ], "topics": [ "seriate_rank", "seriate_rank,data.frame-method", "seriate_rank,matrix-method", "seriate_rank-method" ] }, { "page": "series", "title": "Sampling Times", "concept": [ "mutators" ], "topics": [ "end,AoristicSum-method", "end,CountApportion-method", "series", "span,AoristicSum-method", "span,CountApportion-method", "start,AoristicSum-method", "start,CountApportion-method", "time,EventDate-method" ] }, { "page": "subset", "title": "Extract or Replace Parts of an Object", "concept": [ "mutators" ], "topics": [ "subset", "[,IncrementTest-method", "[,MeanDate-method", "[[,PermutationOrder,ANY,missing-method" ] } ], "_pkglogo": "https://codeberg.org/tesselle/kairos/raw/HEAD/man/figures/logo.png", "_readme": "https://codeberg.org/tesselle/kairos/raw/HEAD/README.md", "_rundeps": [ "aion", "arkhe", "dimensio", "extraDistr", "khroma", "Rcpp", "RcppArmadillo" ], "_vignettes": [ { "source": "event.Rmd", "filename": "event.html", "title": "Event Date Model", "author": "N. Frerebeau", "engine": "knitr::knitr", "headings": [ "Definition", "Event Date", "Accumulation Date", "Limitation", "Usage", "References" ], "created": "2022-10-31 13:16:37", "modified": "2025-04-03 12:39:37", "commits": 14 }, { "source": "seriation.Rmd", "filename": "seriation.html", "title": "Seriation", "author": "N. Frerebeau", "engine": "knitr::knitr", "headings": [ "Introduction", "Reciprocal ranking", "Correspondence analysis", "Seriation", "Refining", "References" ], "created": "2022-05-27 16:43:56", "modified": "2025-05-13 17:36:09", "commits": 18 } ], "_score": 5.518513939877888, "_indexed": true, "_nocasepkg": "kairos", "_universes": [ "tesselle", "nfrerebeau", "codeberg-tesselle" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "2.4.0", "date": "2026-06-03T06:59:04.000Z", "distro": "noble", "commit": "1de6d31394d4f01dae9cc493ef49fc3ed3b15f7b", "fileid": "8123b95b7dbda7a0e611ea60591f9fcfd4d7587ee5a18ef650973cfa59fd90f7", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/tesselle/actions/runs/26868749848" }, { "r": "4.6.0", "os": "linux", "version": "2.4.0", "date": "2026-06-03T06:59:04.000Z", "distro": "noble", "commit": "1de6d31394d4f01dae9cc493ef49fc3ed3b15f7b", "fileid": "487d314c8fa5ccff2b10b5be6e5168dbab0211600ee68bb03fc9fadcab634a5f", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/tesselle/actions/runs/26868749848" }, { "r": "4.5.3", "os": "mac", "version": "2.4.0", "date": "2026-06-03T07:00:06.000Z", "commit": "1de6d31394d4f01dae9cc493ef49fc3ed3b15f7b", "fileid": "82800e8ded1f6f099446b49604a7b4127f8a45c070c3c7e9d851e60774773c57", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/tesselle/actions/runs/26868749848" }, { "r": "4.6.0", "os": "mac", "version": "2.4.0", "date": "2026-06-03T06:59:15.000Z", "commit": "1de6d31394d4f01dae9cc493ef49fc3ed3b15f7b", "fileid": "48f4f73b331874b284637b70879433d327d71733c9bc41a5dd89320f992225ed", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/tesselle/actions/runs/26868749848" }, { "r": "4.6.0", "os": "wasm", "version": "2.4.0", "date": "2026-06-03T06:59:02.000Z", "commit": "1de6d31394d4f01dae9cc493ef49fc3ed3b15f7b", "fileid": "048f3f557296b0fdf9d25a636cee716a947e65129068f8c08fad5edcf431a3cf", "status": "success", "buildurl": "https://github.com/r-universe/tesselle/actions/runs/26868749848" }, { "r": "4.7.0", "os": "win", "version": "2.4.0", "date": "2026-06-03T06:58:46.000Z", "commit": "1de6d31394d4f01dae9cc493ef49fc3ed3b15f7b", "fileid": "adade762814e849934f2e40fad8d10c57de39d41ea9c8b31174469bb2b1cc6e6", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/tesselle/actions/runs/26868749848" }, { "r": "4.5.3", "os": "win", "version": "2.4.0", "date": "2026-06-03T06:58:15.000Z", "commit": "1de6d31394d4f01dae9cc493ef49fc3ed3b15f7b", "fileid": "41f9a0e9b60b1a950a3c85ba3f1ee2d507154842df32f9fd4dd280da9d386ef9", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/tesselle/actions/runs/26868749848" }, { "r": "4.6.0", "os": "win", "version": "2.4.0", "date": "2026-06-03T06:58:19.000Z", "commit": "1de6d31394d4f01dae9cc493ef49fc3ed3b15f7b", "fileid": "6cd9e3633ba8b9f97a4fe159f64be5e908e0fed7d601e46a863dcc29be390e7a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/tesselle/actions/runs/26868749848" } ] }