{
  "_id": "6a1fd0d5b401979e73434f05",
  "Package": "tabula",
  "Title": "Analysis and Visualization of Archaeological Count Data",
  "Version": "3.3.2.9000",
  "Authors@R": "c(\nperson(\"Nicolas\", \"Frerebeau\", , \"nicolas.frerebeau@u-bordeaux-montaigne.fr\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0001-5759-4944\")),\nperson(\"Matthew\", \"Peeples\", , \"matthew.peeples@asu.edu\", role = \"ctb\",\ncomment = c(ORCID = \"0000-0003-4496-623X\")),\nperson(\"Ben\", \"Marwick\", , \"bmarwick@uw.edu\", role = \"ctb\",\ncomment = c(ORCID = \"0000-0001-7879-4531\")),\nperson(\"Jean-Baptiste\", \"Fourvel\", , \"jean-baptiste.fourvel@univ-amu.fr\", role = \"ctb\",\ncomment = c(ORCID = \"0000-0002-1061-4642\")),\nperson(\"Brice\", \"Lebrun\", role = \"art\",\ncomment = c(ORCID = \"0000-0001-7503-8685\", \"Logo designer\")),\nperson(\"Université Bordeaux Montaigne\", role = \"fnd\",\ncomment = c(ROR = \"03pbgwk21\")),\nperson(\"CNRS\", role = \"fnd\",\ncomment = c(ROR = \"02feahw73\"))\n)",
  "Maintainer": "Nicolas Frerebeau\n<nicolas.frerebeau@u-bordeaux-montaigne.fr>",
  "Description": "An easy way to examine archaeological count data. This\npackage provides several tests and measures of diversity:\nheterogeneity and evenness (Brillouin, Shannon, Simpson, etc.),\nrichness and rarefaction (Chao1, Chao2, ACE, ICE, etc.),\nturnover and similarity (Brainerd-Robinson, etc.). It allows to\neasily visualize count data and statistical thresholds: rank vs\nabundance plots, heatmaps, Ford (1962) and Bertin (1977)\ndiagrams, etc.",
  "License": "GPL (>= 3)",
  "URL": "https://codeberg.org/tesselle/tabula,\nhttps://packages.tesselle.org/tabula/,\nhttps://tesselle.r-universe.dev/tabula",
  "BugReports": "https://codeberg.org/tesselle/tabula/issues",
  "VignetteBuilder": "knitr",
  "Encoding": "UTF-8",
  "LazyData": "true",
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  "Collate": "'AllClasses.R' 'AllGenerics.R' 'coerce.R' 'data.R'\n'diversity.R' 'diversity_alpha.R' 'diversity_beta.R'\n'diversity_test.R' 'matrigraph.R' 'mutators.R' 'occurrence.R'\n'plot_bertin.R' 'plot_diceleraas.R' 'plot_diversity.R'\n'plot_ford.R' 'plot_heatmap.R' 'plot_matrix.R' 'plot_rank.R'\n'plot_spot.R' 'rarefaction.R' 'reexport.R' 'resample.R'\n'seriograph.R' 'show.R' 'similarity.R' 'statistics.R'\n'subset.R' 'tabula-deprecated.R' 'tabula-internal.R'\n'tabula-package.R' 'validate.R' 'zzz.R'",
  "Config/roxygen2/version": "8.0.0",
  "Repository": "https://tesselle.r-universe.dev",
  "Date/Publication": "2026-05-04 12:26:32 UTC",
  "RemoteUrl": "https://codeberg.org/tesselle/tabula",
  "RemoteRef": "HEAD",
  "RemoteSha": "93ed1a809a2888bb1eecea89ce593ee26858c8fd",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-03 06:56:02 UTC",
    "User": "root"
  },
  "Author": "Nicolas Frerebeau [aut, cre] (ORCID:\n<https://orcid.org/0000-0001-5759-4944>),\nMatthew Peeples [ctb] (ORCID: <https://orcid.org/0000-0003-4496-623X>),\nBen Marwick [ctb] (ORCID: <https://orcid.org/0000-0001-7879-4531>),\nJean-Baptiste Fourvel [ctb] (ORCID:\n<https://orcid.org/0000-0002-1061-4642>),\nBrice Lebrun [art] (ORCID: <https://orcid.org/0000-0001-7503-8685>,\nLogo designer),\nUniversité Bordeaux Montaigne [fnd] (ROR: <https://ror.org/03pbgwk21>),\nCNRS [fnd] (ROR: <https://ror.org/02feahw73>)",
  "MD5sum": "13dc19880d566d3e16b1776dcb48c9b1",
  "_user": "tesselle",
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  "_created": "2026-06-03T06:56:02.000Z",
  "_published": "2026-06-03T06:59:33.842Z",
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    "message": "Small fixes\n",
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    "archaeology",
    "data-visualization",
    "diversity-index"
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    "bootstrap",
    "color",
    "composition",
    "diversity",
    "doubleton",
    "eppm",
    "evenness",
    "get_method",
    "heterogeneity",
    "index_ace",
    "index_baxter",
    "index_berger",
    "index_binomial",
    "index_boone",
    "index_brainerd",
    "index_bray",
    "index_brillouin",
    "index_chao1",
    "index_chao2",
    "index_cody",
    "index_hurlbert",
    "index_ice",
    "index_jaccard",
    "index_margalef",
    "index_mcintosh",
    "index_menhinick",
    "index_morisita",
    "index_routledge1",
    "index_routledge2",
    "index_routledge3",
    "index_shannon",
    "index_simpson",
    "index_sorensen",
    "index_sorenson",
    "index_squares",
    "index_whittaker",
    "index_wilson",
    "jackknife",
    "matrigraph",
    "observed",
    "occurrence",
    "palette_color_continuous",
    "palette_color_discrete",
    "palette_color_picker",
    "plot",
    "plot_bertin",
    "plot_diceleraas",
    "plot_ford",
    "plot_heatmap",
    "plot_rank",
    "plot_spot",
    "profiles",
    "pvi",
    "rarefaction",
    "resample",
    "richness",
    "seriograph",
    "she",
    "similarity",
    "simulate",
    "singleton",
    "test_shannon",
    "test_simpson",
    "turnover"
  ],
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      "title": "Birds Species and Abundances",
      "object": "aves",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Great-crested grebe",
        "Mallard",
        "Mute swan",
        "Moorhen",
        "Coot",
        "Common sandpiper",
        "Kingfisher",
        "Sandmartin",
        "Dipper",
        "Sedge warbler",
        "Pied wagtail",
        "Grey wagtail",
        "Yellow wagtail",
        "Reed bunting",
        "Heron",
        "Curlew",
        "Lapwing",
        "Redshank",
        "Nuthatch",
        "Tree-creeper",
        "Whinchat",
        "Blackcap",
        "Garden warbler",
        "Whitethroat",
        "Lesser whitethroat",
        "Spotted fly-catcher"
      ],
      "rows": 2,
      "table": true,
      "tojson": true
    },
    {
      "name": "cantabria",
      "title": "Early Magdalenian Engraved Bones",
      "object": "cantabria",
      "class": [
        "data.frame"
      ],
      "fields": [
        "X1",
        "X2",
        "X3",
        "X4",
        "X5",
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        "X8",
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        "X38",
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        "X41",
        "X42",
        "X43",
        "X44"
      ],
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      "table": true,
      "tojson": true
    },
    {
      "name": "pueblo",
      "title": "Pueblo IV Period Ceramics",
      "object": "pueblo",
      "class": [
        "data.frame"
      ],
      "fields": [
        "DLH1",
        "DLH2a",
        "DLH2b",
        "DLH2c",
        "DLH4"
      ],
      "rows": 9,
      "table": true,
      "tojson": true
    },
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      "name": "woodland",
      "title": "Trees Incidences",
      "object": "woodland",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Birch",
        "Oak",
        "Rowan",
        "Beech",
        "Hazel",
        "Holly"
      ],
      "rows": 6,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
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      "page": "aves",
      "title": "Birds Species and Abundances",
      "concept": [
        "datasets"
      ],
      "topics": [
        "aves"
      ]
    },
    {
      "page": "bootstrap",
      "title": "Bootstrap Estimation",
      "concept": [
        "resampling methods"
      ],
      "topics": [
        "bootstrap",
        "bootstrap,DiversityIndex-method"
      ]
    },
    {
      "page": "cantabria",
      "title": "Early Magdalenian Engraved Bones",
      "concept": [
        "datasets"
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        "cantabria"
      ]
    },
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      "page": "data.frame",
      "title": "Coerce to a Data Frame",
      "concept": [
        "mutators"
      ],
      "topics": [
        "as.data.frame,DiversityIndex-method",
        "data.frame"
      ]
    },
    {
      "page": "diversity",
      "title": "Alpha Diversity",
      "concept": [
        "diversity measures"
      ],
      "topics": [
        "diversity",
        "diversity,data.frame-method",
        "diversity,matrix-method",
        "diversity-method"
      ]
    },
    {
      "page": "evenness",
      "title": "Evenness",
      "concept": [
        "diversity measures"
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        "evenness",
        "evenness,data.frame-method",
        "evenness,matrix-method",
        "evenness-method"
      ]
    },
    {
      "page": "heterogeneity",
      "title": "Heterogeneity",
      "concept": [
        "diversity measures"
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        "heterogeneity",
        "heterogeneity,data.frame-method",
        "heterogeneity,matrix-method",
        "heterogeneity-method"
      ]
    },
    {
      "page": "index_ace",
      "title": "Abundance-based Coverage Estimator",
      "concept": [
        "alpha diversity measures"
      ],
      "topics": [
        "index_ace",
        "index_ace,numeric-method",
        "index_ace-method"
      ]
    },
    {
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      "title": "Baxter's Rarefaction",
      "concept": [
        "alpha diversity measures"
      ],
      "topics": [
        "index_baxter",
        "index_baxter,numeric-method",
        "index_baxter-method"
      ]
    },
    {
      "page": "index_berger",
      "title": "Berger-Parker Dominance Index",
      "concept": [
        "alpha diversity measures"
      ],
      "topics": [
        "index_berger",
        "index_berger,numeric-method",
        "index_berger-method"
      ]
    },
    {
      "page": "index_binomial",
      "title": "Binomial Co-Occurrence Assessment",
      "concept": [
        "beta diversity measures"
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        "index_binomial",
        "index_binomial,numeric,numeric-method",
        "index_binomial-method"
      ]
    },
    {
      "page": "index_boone",
      "title": "Boone Heterogeneity Measure",
      "concept": [
        "alpha diversity measures"
      ],
      "topics": [
        "index_boone",
        "index_boone,matrix-method",
        "index_boone-method"
      ]
    },
    {
      "page": "index_brainerd",
      "title": "Brainerd-Robinson Quantitative Index",
      "concept": [
        "beta diversity measures"
      ],
      "topics": [
        "index_brainerd",
        "index_brainerd,numeric,numeric-method",
        "index_brainerd-method"
      ]
    },
    {
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      "title": "Bray-Curtis Similarity",
      "concept": [
        "beta diversity measures"
      ],
      "topics": [
        "index_bray",
        "index_bray,numeric,numeric-method",
        "index_bray-method"
      ]
    },
    {
      "page": "index_brillouin",
      "title": "Brillouin Diversity Index.",
      "concept": [
        "alpha diversity measures"
      ],
      "topics": [
        "index_brillouin",
        "index_brillouin,numeric-method",
        "index_brillouin-method"
      ]
    },
    {
      "page": "index_chao1",
      "title": "Chao1 Estimator",
      "concept": [
        "alpha diversity measures"
      ],
      "topics": [
        "index_chao1",
        "index_chao1,numeric-method",
        "index_chao1-method"
      ]
    },
    {
      "page": "index_chao2",
      "title": "Chao2 Estimator",
      "concept": [
        "alpha diversity measures"
      ],
      "topics": [
        "index_chao2",
        "index_chao2,matrix-method",
        "index_chao2-method"
      ]
    },
    {
      "page": "index_cody",
      "title": "Cody Measure",
      "concept": [
        "beta diversity measures"
      ],
      "topics": [
        "index_cody",
        "index_cody,matrix-method",
        "index_cody-method"
      ]
    },
    {
      "page": "index_hurlbert",
      "title": "Hurlbert's Rarefaction",
      "concept": [
        "alpha diversity measures"
      ],
      "topics": [
        "index_hurlbert",
        "index_hurlbert,numeric-method",
        "index_hurlbert-method"
      ]
    },
    {
      "page": "index_ice",
      "title": "Incidence-based Coverage Estimator",
      "concept": [
        "alpha diversity measures"
      ],
      "topics": [
        "index_ice",
        "index_ice,matrix-method",
        "index_ice-method"
      ]
    },
    {
      "page": "index_jaccard",
      "title": "Jaccard Index",
      "concept": [
        "beta diversity measures"
      ],
      "topics": [
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