NEWS
arkhe 1.7.0 (2024-07-29)
New classes and methods
- Add
scale_midpoint
to rescale a continuous vector to have specified minimum, midpoint and maximum.
Internals
- Reexport
%||%
from base on newer versions of R to avoid conflict messages.
Breaking changes
- Move
palette_*()
functions to khroma.
arkhe 1.6.0 (2024-02-22)
New classes and methods
- Add
describe()
to quickly describe a matrix
-like object.
- Add
sparsity()
to computes data sparsity (proportion of zeros).
arkhe 1.5.0 (2024-01-19)
New classes and methods
- Add
palette_color_continuous()
and palette_color_discrete()
for color mapping.
- Add
palette_shape()
and palette_size()
for symbol shape and size mapping.
- Add
clean_whitespace()
to remove leading/trailing Whitespace.
- Add
seek_*()
and get_*()
to find and get rows/columns by names in a data.frame
.
Enhancements
compact()
and remove_*()
gained a new verbose
argument to report extra information on progress.
Bugfixes & changes
- Rename
needs()
to assert_package()
.
arkhe 1.4.0 (2023-11-17)
New classes and methods
- Add
%||%
to replace NULL
with a default value.
- Add
%+%
to concatenate character vectors.
- Add
scale_range
to rescale a continuous vector to have specified minimum and maximum.
Bugfixes & changes
- Remove deprecated methods.
- Remove
na.rm
argument of numeric predicates (so that the length of the output equals the length of the input).
arkhe 1.3.0 (2023-09-01)
New classes and methods
- Add
remove_constant()
to remove constant columns.
- Add
remove_empty()
to remove empty strings in a matrix
-like object.
- Add
replace_empty()
to replace empty strings in a matrix
-like object.
Bugfixes & changes
- Remove deprecated methods.
- Deprecate
to_long()
and wide_to_long()
.
Internals
- Use tinytest instead of testthat.
arkhe 1.2.0 (2023-05-11)
New classes and methods
- Add
math_lcm()
and math_gcd()
to compute the lowest common multiple and the greatest common divisor.
- Add
interval_hdr()
and interval_credible()
to compute the credible intervals.
Bugfixes & changes
jackknife()
gained a new argument to apply a function on the leave-one-out values (f
).
Internals
- Add
with_seed()
to evaluate an expression with a temporarily seed.
arkhe 1.1.0 (2023-01-18)
New classes and methods
- Add
needs()
to check for the availability of a package.
Bugfixes & changes
- Remove deprecated methods.
- Remove unused argument in
assert_unique()
.
arkhe 1.0.0 (2022-10-28)
New classes and methods
- Add
append_rownames()
to convert row names to an explicit column.
- Add
assert_positive()
, assert_negative()
, assert_odd()
, assert_even()
, assert_constant()
, assert_decreasing()
, assert_increasing()
, assert_lower()
and assert_greater()
to check numeric
vectors.
- Add
bootstrap()
for bootstrap estimation.
- Add
compact()
to remove empty columns/rows in an array-like object.
- Add
discard()
and keep()
remove/keep rows/columns in an array-like object using a predicate function.
- Add
to_long()
to transform a matrix
to a long data.frame
.
Bugfixes & changes
- Export all predicate functions.
- Deprecate
as_long()
, assert_numeric()
, assert_trend()
, assert_relation()
, assert_matrix()
and remove_empty()
.
Breaking changes
- Remove all
*Matrix
classes and methods.
- Rename
compact()
to discard()
.
arkhe 0.5.0 (2022-06-15)
New classes and methods
- Add
assign_rownames()
and assign_colnames()
to make a specific row/column the column/row names of a data.frame
.
- Add
assert_count()
to validate count data (absolute frequencies/integer).
- Add
count()
to count values by rows/columns according to a given predicate.
- Add
detect()
to find rows/columns in an array-like object according to a given predicate.
- Add
compact()
to remove rows/columns in an array-like object according to a given predicate.
- Add
jackknife()
for jackknife estimation.
- Add
confidence()
to compute confidence interval for the mean.
arkhe 0.4.0 (2021-09-18)
New classes and methods
- Add
replace_Inf()
to replace infinite values in a matrix
-like object.
- Add
replace_zero()
to replace zero in a matrix
-like object.
- Add
remove_Inf()
to remove infinite values in a matrix
-like object.
- Add
assert_*()
and validate()
to validate objects.
- Add
get_dates()
, set_dates()<-
to extract/replace dates
slot.
- Add
get_terminus()
, set_terminus()<-
, get_tpq()
, set_tpq()<-
, get_taq()
, set_taq()<-
to extract/replace tpq
and taq
slots.
- Add
summary()
for AbundanceMatrix
objects.
Internals
AbundanceMatrix
class gained a new slot to store the sample sizes (totals
).
AbundanceMatrix
class gained two new slots to store chronological information (dates
, tpq
, taq
).
- Add
AbundanceSummary
class to store summary of an AbundanceMatrix
object.
arkhe 0.3.1 (2021-05-14)
Bugfixes & changes
- Fix warning "data length differs from size of matrix" in examples (R-devel).
arkhe 0.3.0 (2021-04-09)
New classes and methods
- Add
replace_NA()
to replace missing values.
- Add
remove_NA()
, remove_zero()
and remove_empty()
to remove missing values, zeros and empty rows/columns in a matrix
.
- Add
get_samples()
, set_samples()<-
, get_groups()
and set_groups()<-
to extract/replace samples
and groups
slots.
Bugfixes & changes
- Change
OccurrenceMatrix
inheritance (from NumericMatrix
to IntegerMatrix
).
- Rename
AbundanceMatrix
(ambiguous) to CompositionMatrix
.
- Deprecate
as_abundance()
.
- Remove
SimilarityMatrix
class.
as_long()
gained a new reverse
argument.
arkhe 0.2.2 (2020-03-23)
Bugfixes & changes
- CRAN package check error has been fixed (random error with testthat).
- CRAN package check warnings have been fixed (remove nomnoml from suggested packages).
arkhe 0.2.1 (2020-02-15)
Bugfixes & changes
- CRAN package check warnings have been fixed ("documented arguments not in \usage" in the r-devel checks).
arkhe 0.2.0 (2019-12-18)
arkhe 0.1.0