khroma - Colour Schemes for Scientific Data Visualization
Color schemes ready for each type of data (qualitative, diverging or sequential), with colors that are distinct for all people, including color-blind readers. This package provides an implementation of Paul Tol (2018) and Fabio Crameri (2018) <doi:10.5194/gmd-11-2541-2018> color schemes for use with 'graphics' or 'ggplot2'. It provides tools to simulate color-blindness and to test how well the colors of any palette are identifiable. Several scientific thematic schemes (geologic timescale, land cover, FAO soils, etc.) are also implemented.
Last updated 18 days ago
data-visualizationcolour-schemesaccessibility
8.34 score 9 dependents 516 scripts 1.6k downloads
aion - Archaeological Time Series
A toolkit for archaeological time series and time intervals. This package provides a system of classes and methods to represent and work with archaeological time series and time intervals. Dates are represented as "rata die" and can be converted to (virtually) any calendar defined by Reingold and Dershowitz (2018) <doi:10.1017/9781107415058>. This packages offers a simple API that can be used by other specialized packages.
Last updated 18 days ago
time-seriesarchaeologyarchaeological-sciencechronology
6.51 score 3 dependents 20 scripts 759 downloads
dimensio - Multivariate Data Analysis
Simple Principal Components Analysis (PCA) and (Multiple) Correspondence Analysis (CA) based on the Singular Value Decomposition (SVD). This package provides S4 classes and methods to compute, extract, summarize and visualize results of multivariate data analysis. It also includes methods for partial bootstrap validation described in Greenacre (1984, ISBN: 978-0-12-299050-2) and Lebart et al. (2006, ISBN: 978-2-10-049616-7).
Last updated 17 days ago
data-analysismultivariate-analysis
6.00 score 3 dependents 9 scripts 660 downloads
nexus - Sourcing Archaeological Materials by Chemical Composition
Exploration and analysis of compositional data in the framework of Aitchison (1986, ISBN: 978-94-010-8324-9). This package provides tools for chemical fingerprinting and source tracking of ancient materials.
Last updated 17 days ago
archaeologyarchaeological-sciencearchaeometrycompositional-dataprovenance-studies
5.21 score 1 dependents 26 scripts 265 downloads
arkhe - Tools for Cleaning Rectangular Data
A dependency-free collection of simple functions for cleaning rectangular data. This package allows to detect, count and replace values or discard rows/columns using a predicate function. In addition, it provides tools to check conditions and return informative error messages.
Last updated 18 days ago
data-cleaningstatistics
5.21 score 7 dependents 3 scripts 1.2k downloads
tabula - Analysis and Visualization of Archaeological Count Data
An easy way to examine archaeological count data. This package provides several tests and measures of diversity: heterogeneity and evenness (Brillouin, Shannon, Simpson, etc.), richness and rarefaction (Chao1, Chao2, ACE, ICE, etc.), turnover and similarity (Brainerd-Robinson, etc.). It allows to easily visualize count data and statistical thresholds: rank vs abundance plots, heatmaps, Ford (1962) and Bertin (1977) diagrams, etc.
Last updated 18 days ago
data-visualizationarchaeologyarchaeological-science
5.10 score 1 dependents 38 scripts 560 downloads
alkahest - Pre-Processing XY Data from Experimental Methods
A lightweight, dependency-free toolbox for pre-processing XY data from experimental methods (i.e. any signal that can be measured along a continuous variable). This package provides methods for baseline estimation and correction, smoothing, normalization, integration and peaks detection. Baseline correction methods includes polynomial fitting as described in Lieber and Mahadevan-Jansen (2003) <doi:10.1366/000370203322554518>, Rolling Ball algorithm after Kneen and Annegarn (1996) <doi:10.1016/0168-583X(95)00908-6>, SNIP algorithm after Ryan et al. (1988) <doi:10.1016/0168-583X(88)90063-8>, 4S Peak Filling after Liland (2015) <doi:10.1016/j.mex.2015.02.009> and more.
Last updated 17 days ago
spectroscopyarchaeometry
4.85 score 10 scripts 434 downloads
kairos - Analysis of Chronological Patterns from Archaeological Count Data
A toolkit for absolute and relative dating and analysis of chronological patterns. This package includes functions for chronological modeling and dating of archaeological assemblages from count data. It provides methods for matrix seriation. It also allows to compute time point estimates and density estimates of the occupation and duration of an archaeological site.
Last updated 18 days ago
chronologymatrix-seriationarchaeologyarchaeological-science
4.66 score 1 dependents 11 scripts 328 downloads
isopleuros - Ternary Plots
Ternary plots made simple. This package allows to create ternary plots using 'graphics'. It provides functions to display the data in the ternary space, to add or tune graphical elements and to display statistical summaries. It also includes common ternary diagrams which are useful for the archaeologist (e.g. soil texture charts, ceramic phase diagram).
Last updated 16 days ago
archaeometryarchaeological-scienceternary-plotdata-visualization
4.18 score 2 dependents 2 scripts 260 downloadsananke - Quantitative Chronology in Archaeology
A toolbox for quantitative chronology in archaeology. This package provides functions for simple radiocarbon calibration and chronological analysis.
Last updated 18 days ago
time-seriesarchaeologyarchaeological-sciencechronologyradiocarbon-datesradiocarbon-calibration
3.48 score
folio - Datasets for Teaching Archaeology and Paleontology
Datasets for teaching quantitative approaches and modeling in archaeology and paleontology. This package provides several types of data related to broad topics (cultural evolution, radiocarbon dating, paleoenvironments, etc.), which can be used to illustrate statistical methods in the classroom (multivariate data analysis, compositional data analysis, diversity measurement, etc.).
Last updated 1 months ago
archaeologyarchaeological-sciencepaleontologydatasets
3.02 score 1 dependents 2 scripts 538 downloads
kinesis - 'shiny' Applications for the 'tesselle' Packages
A collection of 'shiny' applications for the 'tesselle' packages.
Last updated 17 days ago
archaeologyarchaeological-sciencearchaeometryshiny-apps
2.98 score
tesselle - Easily Install and Load 'tesselle' Packages
Easy install and load key packages from the 'tesselle' suite in a single step. The 'tesselle' suite is a collection of packages for research and teaching in archaeology. These packages focus on quantitative analysis methods developed for archaeology. The 'tesselle' packages are designed to work seamlessly together and to complement general-purpose and other specialized statistical packages. These packages can be used to explore and analyze common data types in archaeology: count data, compositional data and chronological data. Learn more about 'tesselle' at <https://www.tesselle.org>.
Last updated 18 days ago
archaeological-sciencearchaeologystatistics
2.60 score 3 scripts 228 downloads